Our publications

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2011 top  

Abbot P, Abe J, Alcock J, Alizon S, Alpedrinha JA, Andersson M, Andre JB, van Baalen M, Balloux F, Balshine S, Barton N, Beukeboom LW, Biernaskie JM, Bilde T, Borgia G, Breed M, Brown S, Bshary R, Buckling A, Burley NT, Burton-Chellew MN, Cant MA, Chapuisat M, Charnov EL, Clutton-Brock T, Cockburn A, Cole BJ, Colegrave N, Cosmides L, Couzin ID, Coyne JA, Creel S, Crespi B, Curry RL, Dall SR, Day T, Dickinson JL, Dugatkin LA, El Mouden C, Emlen ST, Evans J, Ferriere R, Field J, Foitzik S, Foster K, Foster WA, Fox CW, Gadau J, Gandon S, Gardner A, Gardner MG, Getty T, Goodisman MA, Grafen A, Grosberg R, Grozinger CM, Gouyon PH, Gwynne D, Harvey PH, Hatchwell BJ, Heinze J, Helantera H, Helms KR, Hill K, Jiricny N, Johnstone RA, Kacelnik A, Kiers ET, Kokko H, Komdeur J, Korb J, Kronauer D, Kummerli R, Lehmann L, Linksvayer TA, Lion S, Lyon B, Marshall JA, McElreath R, Michalakis Y, Michod RE, Mock D, Monnin T, Montgomerie R, Moore AJ, Mueller UG, Noe R, Okasha S, Pamilo P, Parker GA, Pedersen JS, Pen I, Pfennig D, Queller DC, Rankin DJ, Reece SE, Reeve HK, Reuter M, Roberts G, Robson SK, Roze D, Rousset F, Rueppell O, Sachs JL, Santorelli L, Schmid-Hempel P, Schwarz MP, Scott-Phillips T, Shellmann-Sherman J, Sherman PW, Shuker DM, Smith J, Spagna JC, Strassmann B, Suarez AV, Sundstrom L, Taborsky M, Taylor P, Thompson G, Tooby J, Tsutsui ND, Tsuji K, Turillazzi S, Ubeda F, Vargo EL, Voelkl B, Wenseleers T, West SA, West-Eberhard MJ, Westneat DF, Wiernasz DC, Wild G, Wrangham R, Young AJ, Zeh DW, Zeh JA & Zink A (2011) Inclusive fitness theory and eusociality. Nature. 471: E1-4; author reply E9-10

Alizon S, Luciani F & Regoes RR (2011) Epidemiological and clinical consequences of within-host evolution. Trends in Microbiology. 19: 24-32

Bruvo R, Adolfsson S, Symonova R, Lamatsch DK, Schön I, Jokela J, Butlin RK & Müller S (2011) Few parasites, and no evidence for Wolbachia infections, in a freshwater ostracod inhabiting temporary ponds. Biological Journal of the Linnean Society. 102: 208-216 PDF

Marcombe S, Darriet F, Agnew P, Etienne M, Yp-Tcha MM, Yebakima A & Corbel V (2011) Field efficacy of new larvicide products for control of multi-resistant Aedes aegypti populations in Martinique (French West Indies). American Journal of Tropical Medicine and Hygiene. 84: 118-126


2010 top  

Adolfsson S, Michalakis Y, Paczesniak D, Bode SN, Butlin RK, Lamatsch DK, Martins MJ, Schmit O, Vandekerkhove J & Jokela J (2010) Evaluation of elevated ploidy and asexual reproduction as alternative explanations for geographic parthenogenesis in Eucypris virens ostracods. Evolution. 64: 986-997 PDF

Alizon S & Boldin B (2010) Within-host viral evolution in a heterogeneous environment: insights into the HIV co-receptor switch. Journal of Evolutionary Biology. 23: 2625-2635

Alizon S, von Wyl V, Stadler T, Kouyos RD, Yerly S, Hirschel B, Böni J, Shah C, Klimkait T, Furrer H, Rauch A, Vernazza PL, Bernasconi E, Battegay M, Bürgisser P, Telenti A, Günthard HF, Bonhoeffer S & the Swiss HIV Cohort Study (2010) Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load. PLoS Pathogens. 6: e1001123 PDF

Bode SNS, Adolfsson S, Lamatsch DK, Martins MJF, Schmit O, Vandekerkhove J, Mezquita F, Namiotko T, Rossetti G, Schon I, Butlin RK & Martens K (2010) Exceptional cryptic diversity and multiple origins of parthenogenesis in a freshwater ostracod. Molecular Phylogenetics and Evolution. 54: 542-552 PDF

Chapuis MP, Crespin L, Estoup A, Auge-Sabatier A, Foucart A, Lecoq M & Michalakis Y (2010) Parental crowding influences life-history traits in Locusta migratoria females. Bulletin of Entomological Research. 100: 9-17 PDF

Darriet F, Marcombe S, Etienne M, Yebakima A, Agnew P, Yp-Tcha MM & Corbel V (2010) Field evalutation of pyriproxyfen and spinosad mixture for the control of insecticide resistant Aedes aegypti in Martinique (French West Indies). Parasites & Vectors. 3: 88 PDF

Djogbénou L, Noel V & Agnew P (2010) Costs of insensitive acetylcholinesterase insecticide resistance for the malaria vector Anopheles gambiae homozygous for the G119S mutation. Malaria Journal. 9: 12 PDF

Echaubard P, Duron O, Agnew P, Sidobre C, Noel V, Weill M & Michalakis Y (2010) Rapid evolution of Wolbachia density in insecticide resistant Culex pipiens. Heredity. 104: 15-19 PDF

Elena SF & Froissart R (2010) New experimental and theoretical approaches towards the understanding of the emergence of viral infections Introduction. Philosophical Transactions of the Royal Society B: Biological Sciences. 365: 1867-1869

Froissart R, Doumayrou J, Vuillaume F, Alizon S & Michalakis Y (2010) The virulence-transmission trade-off in vector-borne plant viruses: a review of (non-)existing studies. Philosophical Transactions of the Royal Society B: Biological Sciences. 365: 1907-1918 PDF

Gutérriez S, Yvon M, Thébaud G, Monsion B, Michalakis Y & Blanc S (2010) Dynamics of the multiplicity of cellular infection in a plant virus. PLoS Pathogens. 6: e1001113 PDF

Martins MJF, Vandekerkhove J, Adolfsson S, Rossetti G, Namiotko T & Jokela J (2010) Effect of environmental stress on clonal structure of Eucypris virens (Crustacea, Ostracoda). Evolutionary Ecology. 24: 911-922 PDF

Park AW, Jokela J & Michalakis Y (2010) Parasites and deleterious mutations: interactions influencing the evolutionary maintenance of sex. Journal of Evolutionary Biology. 23: 1013-1023 PDF


2009 top  

Chapuis MP, Loiseau A, Michalakis Y, Lecoq M, Franc A & Estoup A (2009) Outbreaks, gene flow and effective population size in the migratory locust, Locusta migratoria: a regional-scale comparative survey. Molecular Ecology. 18: 792-800 PDF

de Meeûs T, Prugnolle F & Agnew P (2009) Asexual reproduction in infectious diseases. In Lost Sex. Eds. Schön I, Martens K & Dijk P. pp 517-533. Springer, Netherlands

Marcombe S, Carron A, Darriet F, Etienne M, Agnew P, Tolosa M, Yp-Tcha MM, Lagneau C, Yébakima A & Corbel V (2009) Reduced efficacy of pyrethroid space sprays for dengue control in an area of Martinique with pyrethroid resistance. American Journal of Tropical Medicine and Hygiene. 80: 745-751 PDF

Michalakis Y & Renaud F (2009) Malaria: Evolution in vector control. Nature. 462: 298-300


2008 top  

Berticat C, Bonnet J, Duchon S, Agnew P, Weill M & Corbel V (2008) Costs and benefits of multiple resistance to insecticides for Culex quinquefasciatus mosquitoes. BMC Evolutionary Biology. 8: 104 [- press releases -] PDF

Chapuis MP, Estoup A, Augé-Sabatier A, Foucart A, Lecoq M & Michalakis Y (2008) Genetic variation for parental effects on the propensity to gregarize in Locusta migratoria. BMC Evolutionary Biology. 8: 37 PDF

Chapuis MP, Lecoq M, Michalakis Y, Loiseau A, Sword GA, Piry S & Estoup A (2008) Do outbreaks affect population structure? A worldwide survey in Locusta migratoria, a pest plagued by microsatellite null alleles. Molecular Ecology. 17: 3640–3653 PDF

Gavrilets S & Michalakis Y (2008) Effects of environmental heterogeneity on victim-exploiter coevolution. Evolution. 62: 3100-3116 PDF

Michalakis Y, Bedhomme S, Biron DG, Rivero A, Sidobre C & Agnew P (2008) Virulence and resistance in a mosquito-microsporidium interaction. Evolutionary Applications. 1: 49-56 PDF

Monsion B, Froissart R, Michalakis Y & Blanc S (2008) Large bottleneck size in Cauliflower Mosaic Virus populations during host plant colonization. PLoS Pathogens. 4: e1000174 PDF

Nuismer SL & Gandon S (2008) Moving beyond common-garden and transplant designs: insight into the causes of local adaptation in species interactions. American Naturalist. 171: 658-668

Olivieri I, Singer MC, Magalhaes S, Courtiol A, Dubois Y, Carbonell D, Justy F, Beldade P, Parmesan C & Michalakis Y (2008) Genetic, ecological, behavioral, and geographic differentiation of populations in a thistle weevil: implications for speciation and biocontrol. Evolutionary Applications. 1: 112-128 PDF

Poullain V, Gandon S, Brockhurst MA, Buckling A & Hochberg ME (2008) The evolution of specificity in evolving and coevolving antagonistic interactions between a bacteria and its phage. Evolution. 62: 1-11


2007 top  

Chapuis M-P & Estoup A (2007) Microsatellite null alleles and estimation of population differentiation. Molecular Biology and Evolution. 24: 621-631 PDF

Day T & Gandon S (2007) Applying population-genetic models in theoretical evolutionary epidemiology. Ecology Letters. 10: 876-888

de Meeûs T, Prugnolle F & Agnew P (2007) Asexual reproduction: Genetics and evolutionary aspects. Cellular and Molecular Life Sciences. 64: 1355-1372 PDF

Gandon S & Day T (2007) The evolutionary epidemiology of vaccination. Journal of the Royal Society Interface. 4: 803-817

Gandon S & Otto SP (2007) The evolution of sex and recombination in response to abiotic or coevolutionary fluctuations in epistasis. Genetics. 175: 1835-1853

Michalakis Y (2007) Parasitisme et évolution des traits d'histoire de vie. In Ecologie et évolution des systèmes parasites. (Eds. Thomas F, Guégan JF & Renaud F) de Boeck, Bruxelles PDF

Park AW & Day T (2007) Quarantine and Isolation. In Encylopedia of Epidemiology. Sage Publishing.

Park AW & Glass K (2007) Dynamic patterns of avian and human influenza in east and southeast Asia. Lancet Infectious Diseases. 7: 543-548

Rivero A, Agnew P, Bedhomme S, Sidobre C & Michalakis Y (2007) Resource depletion in Aedes aegypti mosquitoes infected by the microsporidia Vavraia culicis. Parasitology. 134: 1355-1362 PDF


2006 top  

Gandon S, Rivero A & Varaldi J (2006) Superparasitism evolution: adaptation or manipulation? American Naturalist. 161: E1-E22 PDF


2005 top  

Bedhomme S, Agnew P, Sidobre C & Michalakis Y (2005) Pollution by conspecifics as a component of intraspecific competition among Aedes aegypti larvae. Ecological Entomology. 30: 1-7 PDF

Bedhomme S, Agnew P, Vital POY, Sidobre C & Michalakis Y (2005) Prevalence-dependent costs of parasite virulence. PLoS Biology. 3: e262 [- synopsis -] PDF

Biron DG, Agnew P, Marche L, Sidobre C & Michalakis Y (2005) Proteome of Aedes aegypti larvae in response to infection by the intracellular parasite Vavraia culicis. International Journal for Parasitology. 35: 1385-1397 PDF

Chapuis MP, Loiseau A, Michalakis Y, Lecoq M & Estoup A (2005) Characterization and PCR multiplexing of polymorphic microsatellite loci for the locust Locusta migratoria. Molecular Ecology Notes. 5: 554-557

Froissart R, Roze D, Uzest M, Galibert L, Blanc S & Michalakis Y (2005) Recombination every day: Abundant recombination in a virus during a single multi-cellular host infectiton. PLoS Biology. 3: e89 [- synopsis -] PDF

McCoy KD, Chapuis E, Tirard C, Boulinier T, Michalakis Y, Bohec CL, Maho YL & Gauthier-Clerc M (2005) Recurrent evolution of host-specialized races in a globally distributed parasite. Proceedings of the Royal Society of London, Series B. 272: 2389-95. PDF

Michalakis Y & Renaud F (2005) Malaria - fungal allies enlisted. Nature. 435: 891 PDF

Montville R, Froissart R, Remold SK, Tenaillon O & Turner PE (2005) Evolution of mutational robustness in an RNA virus PLoS Biology. 3: e381 [- synopsis -] PDF

Morgan AD, Gandon S & Buckling A (2005) The effect of migration on local adaptation in a coevolving host-parasite system. Nature. 437: 253-256 PDF

Plisson C, Uzest M, Drucker M, Froissart R, Dumas C, Conway J, Thomas D, Blanc S & Bron P (2005) Structure of the mature P3-virus particle complex of cauliflower mosaic virus revealed by cryo-electron microscopy Journal of Molecular Biology. 346: 267-277 PDF

Prugnolle F, Roze D, Theron A & de Meeûs T (2005) F-statistics under alternation of sexual and asexual reproduction: a model and data from schistosomes (platyhelminth parasites). Molecular Ecology. 14: 1355-65. PDF

Roze D, Rousset F & Michalakis Y (2005) Germline bottlenecks, biparental inheritance and selection on mitochondrial variants: a two-level selection model. Genetics. 170: 1385-1399 PDF


2004 top  

Agnew P, Berticat C, Bedhomme S, Sidobre C & Michalakis Y (2004) Parasitism increases and decreases the costs of insecticide resistance in mosquitoes. Evolution. 58: 579-586 PDF

Bedhomme S, Agnew P, Sidobre C & Michalakis Y (2004) Virulence reaction norms across a food gradient. Proceedings of the Royal Society of London, Series B. 271: 739-744 PDF

Froissart R, Uzest M, Ruiz-Ferrer V, Drucker M, Hebrard E, Hohn T & Blanc S (2004) Splicing of Cauliflower mosaic virus 35S RNA serves to downregulate a toxic gene product. Journal of General Virology. 85: 2719-2726 PDF

Froissart R, Wilke CO, Montville R, Remold SK, Chao L & Turner PE (2004) Co-infection weakens selection against epistatic mutations in RNA viruses. Genetics. 168: 9-19 [- corrigendum -] PDF

Michalakis Y & Roze D (2004) Epistasis in RNA viruses. Science. 306: 1492-1493 PDF

Roze D & Rousset FO (2004) Joint effects of self-fertilization and population structure on mutation load, inbreeding depression and heterosis. Genetics. 167: 1001-1015


2003 top  

Agnew P, Becnel JJ, Ebert D & Michalakis Y (2003) Symbiosis of microsporidia and insects, pp 145-163 in Insect Symbiosis (Ed. Bourtzis K & Miller T) CRC Press LLC, Florida, USA PDF

Bedhomme S, Agnew P, Sidobre C & Michalakis Y (2003) Sex-specific reaction norms to intraspecific larval competition in the mosquito Aedes aegypti. Journal of Evolutionary Biology. 16: 721-730 PDF

Durand P, Michalakis Y, Cestier S, Oury B, Leclerc MC, Tibayrenc M & Renaud F (2003) Significant linkage disequilibrium and high genetic diversity in a population of Plasmodium falciparum from an area (Republic of the Congo) highly endemic for malaria. American Journal of Tropical Medicine and Hygiene. 68: 345-349 PDF

McCoy KD, Boulinier T, Tirard C & Michalakis Y (2003) Host-dependent genetic structure of parasite populations: differential dispersal of seabird tick host races. Evolution. 57: 288-296 PDF

McCoy KD, Tirard C & Michalakis Y (2003) Spatial genetic structure of the ectoparasite Ixodes uriae within breeding cliffs of its colonial seabird host. Heredity. 91: 422-9. PDF


2002 top  

Agnew P, Hide M, Sidobre C & Michalakis Y (2002) A minimalist approach to the effects of density-dependent competition on insect life-history traits. Ecological Entomology. 27: 396-402 PDF

Drucker M, Froissart R, Hebrard E, Uzest M, Ravallec M, Esperandieu P, Mani JC, Pugniere M, Roquet F, Fereres A & Blanc S (2002) Intracellular distribution of viral gene products regulates a complex mechanism of cauliflower mosaic virus acquisition by its aphid vector. Proceedings of the National Academy of Sciences USA. 99: 2422-2427 PDF

Froissart R, Michalakis Y & Blanc S (2002) Helper component-transcomplementation in the vector transmission of plant viruses. Phytopathology. 92: 576-579 PDF

Gandon S & Michalakis Y (2002) Local adaptation, evolutionary potential and host-parasite coevolution: interactions between migration, mutation, population size and generation time. Journal of Evolutionary Biology. 15: 451-462 PDF

Gandon S, Agnew P & Michalakis Y (2002) Coevolution between parasite virulence and host life-history traits. American Naturalist. 160: 374-388 PDF

McCoy KD, Boulinier T, Schjorring S & Michalakis Y (2002) Local adaptation of the ectoparasite Ixodes uriae to its seabird host. Evolutionary Ecology Research. 4: 441-456 PDF


2001 top  

Agnew P, Holzmuller P, Michalakis Y, Sereno D, Lemesre JL & Renaud F (2001) In vitro growth of Leishmania amazonensis promastigotes resistant to pentamidine is dependent on interactions among strains. Antimicrobial Agents and Chemotherapy. 45: 1928-1929 PDF

Hebrard E, Drucker M, Leclerc D, Hohn T, Uzest M, Froissart R, Strub JM, Sanglier S, van Dorsselaer A, Padilla A et al (2001) Biochemical characterization of the helper component of Cauliflower mosaic virus. Journal of Virology. 75: 8538-8546

McCoy KD, Boulinier T, Tirard C & Michalakis Y (2001) Host specificity of a generalist parasite: genetic evidence of sympatric host races in the seabird tick Ixodues uriae. Journal of Evolutionary Biology. 14: 395-405 PDF


2000 top  

Agnew P, Haussy C & Michalakis Y (2000) Effects of density and larval competition on selected life history traits of Culex pipiens quinquefasciatus (Diptera: Culicidae). Journal of Medical Entomology. 37: 732-735 PDF

Agnew P, Koella JC & Michalakis Y (2000) Host life history responses to parasitism. Microbes and Infection. 2: 891-896 PDF

Gandon S & Michalakis Y (2000) Evolution of parasite virulence against qualitative or quantitative host resistance. Proceedings of the Royal Society of London, Series B. 267: 985-990 PDF

Thomas F, Guégan JF, Michalakis Y & Renaud F (2000) Parasites and host life-history traits: implications for community ecology and species co-existence. International Journal for Parasitology. 30: 669-674 PDF

Thomas F, Poulin R, Guégan JF, Michalakis Y & Renaud F (2000) Are there pros as well as cons to being parasitized? Parasitology Today. 16: 533-536 PDF


1999 top  

Gandon S & Michalakis Y (1999) Evolutionarily stable dispersal rate in a metapopulation with extinctions and kin competition. Journal of Theoretical Biology. 199: 275-290 PDF

Kaltz O, Gandon S, Michalakis Y & Shykoff JA (1999) Local maladaptation in the anther-smut fungus Microbotryum violaceum to its host plant Silene latifolia: Evidence from a cross-inoculation experiment. Evolution. 53: 395-407 PDF

McCoy K, Boulinier T, Chardine JW, Danchin E & Michalakis Y (1999) Dispersal and distribution of the tick Ixodes uriae within and among seabird host populations: The need for a population genetic approach. Journal of Parasitology. 85: 196-202 PDF


1998 top  

de Meeûs T, Michalakis Y & Renaud F (1998) Santa Rosalia revisited: or why are there so many kinds of parasites in 'the garden of earthly delights'? Parasitology Today. 14: 10-13 PDF

Estoup A, Rousset F, Michalakis Y, Cornuet JM, Adriamanga M & Guyomard R (1998) Comparative analysis of microsatellite and allozyme markers: a case study investigating microgeographic differentiation in brown trout (Salmo trutta). Molecular Ecology. 7: 339-353

 

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